rs31282861 SNP Detail

Summary

• ID
  rs31282861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36346181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGTGCCCC AATTCTCTAG CCCTACCACC
  GACCAGTAAT ATGAGCTAAT TAATCACCCA GGCCTGTTTT GCTCTATATA ATGAAGATAA
  TGATGGTATG AAATGCACCG AGCTGTATGA GTATTATAGT TAATCAACAG AATTTGATTC
  Y
  GGGGATACTA ACTACATAAT AGGAACAGAG TTCGAGTTCA AGCTAATAAG GCTTTCTGCT
  TTTAAATCTC AAGTTTTAGC GTCATCTTCT ATAACCCACA CGGGTCCAAA TGACTGTTCT
  CTCTACTAAT CTTGTCCACA TTCACCCTCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45014550	mCV27594577	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss148924885	ENSMUSSNP6704514	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss319688332	CHEV_1_36363945	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31282861					SNP	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36346181 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	633 bp upstream
Cpgi139	CpG island 139	471 bp proximal
Gm70585	predicted gene, 70585	within coordinates
Rr366864	regulatory region 366864	810 bp upstream
Rr395991	regulatory region 395991	432 bp upstream
Rr409282	regulatory region 409282	1752 bp distal
Rr409283	regulatory region 409283	within coordinates
Rr409284	regulatory region 409284	514 bp proximal
Rr409285	regulatory region 409285	680 bp proximal
Tssr6253	transcription start site region 6253	627 bp upstream
Tssr6254	transcription start site region 6254	645 bp upstream
Tssr6255	transcription start site region 6255	674 bp upstream
Tssr6256	transcription start site region 6256	959 bp upstream
Tssr6257	transcription start site region 6257	1037 bp upstream
Tssr6258	transcription start site region 6258	1167 bp upstream