rs31285713 SNP Detail

Summary

• ID
  rs31285713
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43088813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAGGGAGA AGTGTCCCCA ATGTGAGACA GGTCTCTCTC
  CAGTGACCTG GAGGTGAAAT TGGAAGGCTG GAGAACAGCT ACGAAGGGAC AAGGCTTGGG
  R
  TCAGAGGCAC AAAGCAAGCA AGGAAAGCAC TTGAGACTCT GGTCTGACAG AGACGGCAGA
  GCCATCACAG GTTTGATGGA AGCCCATGAT CTTGGAGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46016405	mCV22666104	ABI	CRAMUS_MOUSE	f	SNP		A	G					G	A
ss51478217	NES13970324	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		A	G	G	A	G	A	A	G
ss149072737	ENSMUSSNP1314646	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31285713					SNP	G	A	G	G	G	G	G	G	A	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478217	NES13970324	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43088813 () rs orientation: forward

Symbol	Name	Function Class
Cldnd2	claudin domain containing 2	1393 bp upstream
Nkg7	natural killer cell group 7 sequence	1143 bp downstream
Tssr66001	transcription start site region 66001	1793 bp downstream
Tssr66002	transcription start site region 66002	1765 bp downstream
Tssr66003	transcription start site region 66003	1432 bp upstream
Tssr66004	transcription start site region 66004	1456 bp upstream