rs31285913 SNP Detail

Summary

• ID
  rs31285913
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:159680178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCAGGGC CCTGACTGCT
  CAGCAGGTAG GAAGGGGGAC GTTCTGGGTT CTAGCTCCAG TTGGTTGGGG AGGAAGAATG
  GAGAAGAGGG GACAAAATAA TTCCCAGTTT GGTCATACTC ATTCGCTTGC TGTAGCAACT
  GTTTGCAAGT TCATAACAGT TGATGGGGTC ATATTCAGAA TAAGATCTGG ATCACTACCG
  M
  TGAGACTAGA ACCAAGACAA TGACAGTAGA GATGACAACA CCTTAAGGTT CTTAACTACT
  ATTGTCCTTA AGGTAGGGTG CCTGGTTTAT TAGCCTATCC TGTTGTCAAA TAACACAAAA
  ACAGTTGGGT CAGTTATAAA GAGGTTTATT TGGGATAGCA GTTCTAGAAG TTCAAGGAAA
  GGTGGCTACA TCTAGTGATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49722971	NES13047439	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31285913					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49722971	NES13047439	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:159680178 () rs orientation: forward

Symbol	Name	Function Class
Rr421574	regulatory region 421574	1748 bp proximal
Tnr	tenascin R	Intron