rs31286303 SNP Detail

Summary

• ID
  rs31286303
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33898751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG ATAGTATAAT ACCCAAAAGT
  R
  GCTTCAGATT TGTTCTTAAG TCATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45516970	mCV24614167	ABI	CRAMUS_MOUSE	f	SNP		A	A				G		G
ss51450276	NES14437876	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	A		A	G	A	G		A	A	A
ss134758210	ENSMUSSNP1243776	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31286303					SNP	A	A	A	G	G	A	G	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51450276	NES14437876	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33898751 () rs orientation: forward

Symbol	Name	Function Class
Ccdc39	coiled-coil domain containing 39	292 bp upstream
Rr575077	regulatory region 575077	within coordinates
Tssr32964	transcription start site region 32964	354 bp upstream
Tssr32965	transcription start site region 32965	289 bp upstream