rs31286326 SNP Detail

Summary

• ID
  rs31286326
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34464354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATTGGGA AAACAGAGAT
  CCAGCTGGCG TATTGAAATG AAATGTACCA CAAATTTCCA ACAGAGGAAC TGACTGAACT
  ACATATAGTC TATCAGTAAA AGGATTAAAA GCATCATTTA CAGACTGAAA AACATTTAGT
  ACTGCTGTGA ATTCTGCCAG CTGAGCAGAA AGTCCAGGGG TCTCTATGAC TACCTGTTGA
  Y
  TATTTATAAA ATATCCTGTG TGTCTTTTAG AGGAGCCATC AGTAAATATT AAAAAAAAGC
  ATTATGTAGA GGTTGTAAAG ATGTTTTATG AGGAAATATA ACCTTATGTG CATTTAAAAT
  TTTTATCAGC CTATCTTGAG GATGACTATC TATAATGCCA TCAAATCCTA TTTGAGCAAG
  CAACCAATCT GTACTATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45016203	mCV24132662	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss51237536	NES14285930	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		T	C	C	C	C	C	C	C	T
ss148888433	ENSMUSSNP5384794	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31286326					SNP	T	T	C	C	C	T	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51237536	NES14285930	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34464354 () rs orientation: forward

Symbol	Name	Function Class
Gm37233	predicted gene, 37233	745 bp downstream