rs31286858 SNP Detail

Summary

• ID
  rs31286858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21576562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA GCATTTGGCT CAAACTTTCT
  Y
  TTCTACTGAA GTTTTGTGGG TTGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss45518037	mCV24729293	ABI	CRAMUS_MOUSE	f	SNP	C	C	C				T
ss46838243	NES10849076	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C		T	C	C
ss134682704	ENSMUSSNP3457926	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs31286858					SNP	C	C	C	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46838243	NES10849076	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21576562 () rs orientation: forward

Symbol	Name	Function Class
Gm65698	predicted gene, 65698	within coordinates
Rr574129	regulatory region 574129	1927 bp proximal