rs31287127 SNP Detail

Summary

• ID
  rs31287127
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189406764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCGGTAGG ACTACAGACA CATGCAACCA TTACCAGCTA
  TGTTGAATTA CTATGTGTAC ATATGTGATG GGAGCGCGCA ACACAAGCAA ACAGGTCAGA
  K
  AACAGCTTCT GGGAGGGAGT CAGTTCTCTC CTACAAGGGC TCCAAGGACT AAACTCAGGC
  TGTCAGTTTC TGTAGCAGCT ACTTTTACCC ACTGAGTCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45015657	mCV27560406	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss146488447	ENSMUSSNP5267291	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31287127					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189406764 () rs orientation: forward

Symbol	Name	Function Class
Cenpf	centromere protein F	Intron
Gm70084	predicted gene, 70084	within coordinates
Rr425819	regulatory region 425819	870 bp proximal
Rr425820	regulatory region 425820	954 bp proximal
Rr425821	regulatory region 425821	1126 bp proximal