rs31287536 SNP Detail

Summary

• ID
  rs31287536
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125869885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG CTCATTAGGA ATGCAACCTA
  R
  GAGACATTGT TCTCAACAGA GCTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss46016718	mCV25172318	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss145871753	ENSMUSSNP1130805	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322450380	CHEV_7_133414227	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs31287536					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125869885 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	1004 bp proximal
Rr368426	regulatory region 368426	1035 bp upstream
Rr381444	regulatory region 381444	within coordinates
Rr655453	regulatory region 655453	1416 bp proximal
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	1700 bp upstream
Tssr69003	transcription start site region 69003	1715 bp upstream
Tssr69004	transcription start site region 69004	1731 bp upstream
Tssr69005	transcription start site region 69005	1750 bp upstream
Tssr69006	transcription start site region 69006	1762 bp upstream
Tssr69007	transcription start site region 69007	1793 bp upstream
Tssr69008	transcription start site region 69008	1813 bp upstream
Tssr69009	transcription start site region 69009	1876 bp upstream