rs31288662 SNP Detail

Summary

• ID
  rs31288662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95860192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG ATCTGTGGTG CCTGCCAGTT
  Y
  ACAGGGGGAG AATGGGCCGT CACCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45517749	mCV25062164	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss135513203	ENSMUSSNP1331314	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss320841258	CHEV_3_95756803	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31288662					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95860192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	1390 bp distal
Gm56819	predicted gene, 56819	1589 bp upstream
Gm65572	predicted gene, 65572	1194 bp downstream
Rr375411	regulatory region 375411	992 bp downstream
Rr581095	regulatory region 581095	1600 bp distal
Rr581096	regulatory region 581096	1542 bp distal
Rr581097	regulatory region 581097	896 bp distal
Rr581098	regulatory region 581098	218 bp proximal
Rr581099	regulatory region 581099	1249 bp proximal
Tssr30663	transcription start site region 30663	1794 bp downstream
Tssr30664	transcription start site region 30664	1513 bp downstream
Tssr34570	transcription start site region 34570	1844 bp upstream