rs31290235 SNP Detail

Summary

• ID
  rs31290235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41184566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGGAATGCTG CCCAAGCATC ATCACCTTCA GAAAGAGCTG CCCTTCTTCT CAGGAGGAAT
  GTTGAAGACA CTGGCAAATT ACTGAGAGTG ATAATGTTCT CCCAGGCTCA GCAATGGTGG
  GCACCCTGCT ATCATTCTCT GACGGGTTTC TCAGACTTGA GGACAGTTGA ACTCTTTAAA
  TATCTGTCTG TCTATCTATC TATCTATCTA TCTATCTATC TATCTATCTA TCTATCTATC
  CATCCATCCA TCCATCCATC CATCCATCCA TCCATCCATC CATCCATCCA TCTATCTATC
  Y
  ATCTATCTAT CTATCTATCT ATCTATCTAT CTATCTATCT ATCTATCTAT CTATCTATCT
  ATCTATCATC TATATCTATC TATCTATCTA TCTATCTATC TATCTATCTA TCTATCTATC
  TATCTATCTA TCTATCATCT CTATCTATCT ATCTATCTAT CTATCTATCT ATCTATCTAT
  CTATCTATCT ATCTATCTGT GTGTGCCTGC TTGTTTGTAT GTGCATTACA TGTATCAATG
  TGCTCTTGGA GGCTAGAAGA GGGTATTGGA TACCCTGTAA CTGGAGTTAC AGGTATTTGT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45519586	mCV24790030	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31290235					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41184566 () rs orientation: forward

Symbol	Name	Function Class
Gm64942	predicted gene, 64942	within coordinates
Rr575921	regulatory region 575921	1186 bp distal
Rr575922	regulatory region 575922	1464 bp distal