rs31290347 SNP Detail

Summary

• ID
  rs31290347
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88623881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTG TTAAGAGCAC TGCTCTTCCA
  W
  AGGTCCTGAG TTCAAATTCC AGCAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45517880	mCV24856440	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss320836102	CHEV_3_88520496	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs31290347					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88623881 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13390	CpG island 13390	170 bp proximal
Rit1	Ras-like without CAAX 1	273 bp upstream
Rr397776	regulatory region 397776	62 bp upstream
Rr579875	regulatory region 579875	within coordinates
Rr579876	regulatory region 579876	1334 bp proximal
Tssr30018	transcription start site region 30018	264 bp upstream
Tssr30019	transcription start site region 30019	310 bp upstream
Tssr30020	transcription start site region 30020	342 bp upstream