rs31290564 SNP Detail

Summary

• ID
  rs31290564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151825964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTATCCA AATGTAAACG
  CCTGGGGACA GTACACAGTG ACTCAGCATG GCAGTAGTCA GGAAGCAGGC TCTGGTCACT
  GTGACCTTCT CGCAGAGACC CTGGGAAAAC AGCTTTAAGT TTAGAATGAC TGTGGGGATT
  GGATGGTTTT TTTTTTGCTT ATAAAAGTAG ATGGGAGAGA TGGCTCAGGG GATAACAGCA
  Y
  TTCTATTTAA GTATGAAGAG CTTAGTTCAA ATCCCCAGCA CCTACATAAG GAAGCCAAGC
  ATGGCTACAC AGGGTTGGGG GACAGAGACA GGCAGAGGAC AGGAGCTCCA TGACGAGCGA
  GCCTAGCTGA AACTGTGAGC TTTGGGTTCA GTGAGAGACC CTGGGCTAAG AAACAAGGCA
  GAGTGTATAA GAGATACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45517680	mCV24210981	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss136100949	ENSMUSSNP6060744	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss321028150	CHEV_3_151783291	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31290564					SNP	T	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151825964 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587460	regulatory region 587460			71 bp distal
Rr587461	regulatory region 587461			1245 bp proximal
Tssr1098	transcription start site region 1098			213 bp upstream
Tssr32394	transcription start site region 32394			7 bp downstream