rs31291470 SNP Detail

Summary

• ID
  rs31291470
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28854826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTA CCCAACCAGA ACCTTGGCCC
  Y
  TCCCCCAGAG TAAGCCTCAC CCACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
ss46017603	mCV23832900	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss322127381	CHEV_7_29940420	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
rs31291470					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28854826 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	279 bp upstream
Cpgi18740	CpG island 18740	within coordinates
Fam98c	family with sequence similarity 98, member C	within coordinates
Gm73440	predicted gene, 73440	1052 bp downstream
Rasgrp4	RAS guanyl releasing protein 4	1440 bp downstream
Rr400219	regulatory region 400219	711 bp upstream
Rr644490	regulatory region 644490	1173 bp distal
Rr644491	regulatory region 644491	within coordinates
Rr644492	regulatory region 644492	301 bp proximal
Rr644493	regulatory region 644493	772 bp proximal
Rr644494	regulatory region 644494	795 bp proximal
Rr644495	regulatory region 644495	920 bp proximal
Rr644496	regulatory region 644496	1909 bp proximal
Tssr65599	transcription start site region 65599	242 bp upstream
Tssr65600	transcription start site region 65600	270 bp upstream
Tssr65601	transcription start site region 65601	343 bp upstream
Tssr71610	transcription start site region 71610	196 bp downstream
Tssr71611	transcription start site region 71611	221 bp downstream
Tssr71612	transcription start site region 71612	316 bp downstream
Tssr71613	transcription start site region 71613	535 bp downstream
Tssr71614	transcription start site region 71614	562 bp downstream
Tssr71615	transcription start site region 71615	771 bp downstream