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rs31291793 SNP Detail
Summary
  • ID
    rs31291793
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr7:44130404 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CCCTG TGGTTTTCCA CACATTCTCT
    M
    TCCTCTCTTT CCCCTTCACC CTCTA                                      
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
LG/J
SM/J
ss46016475 mCV25286506 ABI CRAMUS_MOUSE f SNP A C
ss322198946 CHEV_7_51736350 CHEVERUD SCREENING_POP f SNP A C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
LG/J
SM/J
rs31291793 SNP A C A C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44130404 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr646103 regulatory region 646103 1604 bp proximal
Tssr2227 transcription start site region 2227 1960 bp downstream
Tssr2228 transcription start site region 2228 897 bp downstream
Tssr2229 transcription start site region 2229 622 bp downstream
Tssr2230 transcription start site region 2230 439 bp downstream
Tssr2231 transcription start site region 2231 312 bp downstream
Tssr2232 transcription start site region 2232 138 bp downstream
Tssr2233 transcription start site region 2233 93 bp downstream
Tssr2234 transcription start site region 2234 53 bp upstream
Tssr2235 transcription start site region 2235 687 bp upstream
Tssr66295 transcription start site region 66295 1745 bp downstream
Tssr66296 transcription start site region 66296 1574 bp downstream
Tssr66297 transcription start site region 66297 1550 bp downstream
Tssr66298 transcription start site region 66298 1495 bp downstream
Tssr66299 transcription start site region 66299 1475 bp downstream
Tssr66300 transcription start site region 66300 1452 bp downstream
Tssr66301 transcription start site region 66301 1436 bp downstream
Tssr66302 transcription start site region 66302 1395 bp downstream
Tssr66303 transcription start site region 66303 1386 bp downstream
Tssr66304 transcription start site region 66304 1381 bp downstream
Tssr66305 transcription start site region 66305 1342 bp downstream
Tssr66306 transcription start site region 66306 1288 bp downstream
Tssr66307 transcription start site region 66307 1239 bp downstream
Tssr66308 transcription start site region 66308 1222 bp downstream
Tssr66309 transcription start site region 66309 1172 bp downstream
Tssr66310 transcription start site region 66310 1103 bp downstream
Tssr66311 transcription start site region 66311 1080 bp downstream
Tssr66312 transcription start site region 66312 1061 bp downstream
Tssr66313 transcription start site region 66313 1051 bp downstream
Tssr66314 transcription start site region 66314 1033 bp downstream
Tssr66315 transcription start site region 66315 1026 bp downstream
Tssr66316 transcription start site region 66316 961 bp downstream
Tssr66317 transcription start site region 66317 945 bp downstream
Tssr66318 transcription start site region 66318 904 bp downstream
Tssr66319 transcription start site region 66319 876 bp downstream
Tssr66320 transcription start site region 66320 852 bp downstream
Tssr66321 transcription start site region 66321 828 bp downstream
Tssr66322 transcription start site region 66322 812 bp downstream
Tssr66323 transcription start site region 66323 774 bp downstream
Tssr66324 transcription start site region 66324 721 bp downstream
Tssr66325 transcription start site region 66325 680 bp downstream
Tssr66326 transcription start site region 66326 670 bp downstream
Tssr66327 transcription start site region 66327 650 bp downstream
Tssr66328 transcription start site region 66328 632 bp downstream
Tssr66329 transcription start site region 66329 593 bp downstream
Tssr66330 transcription start site region 66330 580 bp downstream
Tssr66331 transcription start site region 66331 566 bp downstream
Tssr66332 transcription start site region 66332 533 bp downstream
Tssr66333 transcription start site region 66333 498 bp downstream
Tssr66334 transcription start site region 66334 492 bp downstream
Tssr66335 transcription start site region 66335 481 bp downstream
Tssr66336 transcription start site region 66336 467 bp downstream
Tssr66337 transcription start site region 66337 451 bp downstream
Tssr66338 transcription start site region 66338 367 bp downstream
Tssr66339 transcription start site region 66339 335 bp downstream
Tssr66340 transcription start site region 66340 268 bp downstream
Tssr66341 transcription start site region 66341 219 bp downstream
Tssr66342 transcription start site region 66342 190 bp downstream
Tssr66343 transcription start site region 66343 164 bp downstream
Tssr66344 transcription start site region 66344 7 bp downstream
Tssr66345 transcription start site region 66345 9 bp upstream
Tssr66346 transcription start site region 66346 65 bp upstream
Tssr66347 transcription start site region 66347 103 bp upstream
Tssr66348 transcription start site region 66348 144 bp upstream
Tssr66349 transcription start site region 66349 168 bp upstream
Tssr66350 transcription start site region 66350 196 bp upstream
Tssr66351 transcription start site region 66351 204 bp upstream
Tssr66352 transcription start site region 66352 240 bp upstream
Tssr66353 transcription start site region 66353 314 bp upstream
Tssr66354 transcription start site region 66354 328 bp upstream
Tssr66355 transcription start site region 66355 355 bp upstream
Tssr66356 transcription start site region 66356 372 bp upstream
Tssr66357 transcription start site region 66357 386 bp upstream
Tssr66358 transcription start site region 66358 398 bp upstream
Tssr66359 transcription start site region 66359 424 bp upstream
Tssr66360 transcription start site region 66360 436 bp upstream
Tssr66361 transcription start site region 66361 462 bp upstream
Tssr66362 transcription start site region 66362 494 bp upstream
Tssr66363 transcription start site region 66363 511 bp upstream
Tssr66364 transcription start site region 66364 544 bp upstream
Tssr66365 transcription start site region 66365 564 bp upstream
Tssr66366 transcription start site region 66366 584 bp upstream
Tssr66367 transcription start site region 66367 612 bp upstream
Tssr66368 transcription start site region 66368 634 bp upstream
Tssr66369 transcription start site region 66369 668 bp upstream
Tssr66370 transcription start site region 66370 710 bp upstream
Tssr66371 transcription start site region 66371 1135 bp upstream
Tssr66372 transcription start site region 66372 1298 bp upstream
Tssr66373 transcription start site region 66373 1588 bp upstream
Tssr66374 transcription start site region 66374 1646 bp upstream
Tssr66375 transcription start site region 66375 1657 bp upstream
Tssr66376 transcription start site region 66376 1670 bp upstream
Tssr66377 transcription start site region 66377 1709 bp upstream
Tssr66378 transcription start site region 66378 1731 bp upstream
Tssr66379 transcription start site region 66379 1743 bp upstream
Tssr66380 transcription start site region 66380 1776 bp upstream
Tssr66381 transcription start site region 66381 1795 bp upstream
Tssr66382 transcription start site region 66382 1819 bp upstream
Tssr66383 transcription start site region 66383 1929 bp upstream
Tssr72202 transcription start site region 72202 1172 bp upstream
Tssr72203 transcription start site region 72203 792 bp upstream
Tssr72204 transcription start site region 72204 192 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory