rs31291949 SNP Detail

Summary

• ID
  rs31291949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:70093055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCA CTCTCATTAT TCTGTACATC
  R
  GTAACCCTCA CTAGCCACCC GCTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46507870	mCV22726336	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss134200619	ENSMUSSNP6146736	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss325895425	CHEV_X_68302624	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31291949					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:70093055 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22753	CpG island 22753	299 bp proximal
Gm61915	predicted gene, 61915	within coordinates
Gm61918	predicted gene, 61918	within coordinates
Mamld1	mastermind-like domain containing 1	791 bp upstream
Rr691735	regulatory region 691735	within coordinates
Rr691736	regulatory region 691736	515 bp proximal
Rr691737	regulatory region 691737	633 bp proximal
Tssr161155	transcription start site region 161155	616 bp upstream
Tssr161156	transcription start site region 161156	677 bp upstream
Tssr161157	transcription start site region 161157	711 bp upstream