rs31292249 SNP Detail

Summary

• ID
  rs31292249
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:13012327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTACTATT CTCAATGTGT
  ATCTTCGTTT TGGACACGGC GCCTTGTCCT CAGATGGGCT TCTTCACTAC TAATGCTCCC
  CCGGGCCCCC ACGTCCCGCT GAGCCTCTTG TCCCTTGCAC AGCCCCTTTT ATCCAGTTCC
  CACCTCTCGA GACTCTCTCA ACCTGTCTCT CCGCTGCTCC TCCCGGCCTG ACCATCCCAC
  M
  TAGCGGTGCT TCTCCACTCC TAAAGCTGTG CACCCTTCCG GCCCCCTCCC CCTCAACTCA
  CCTACCCAAC CCAAAGCGGC GTCCACCTCC CACAATGCCT CGCGCCCAAG CCCAGCCCGG
  CCCTTGCTCC CGGGATGCCC CGCGCGGTAT CCCGCCTTTC TTCCCCTAGT GCCTGGCAAG
  GTGGCTTTCC ACCAACCCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46018101	mCV22927753	ABI	CRAMUS_MOUSE	f	SNP		C	A	A
ss148344314	ENSMUSSNP6408843	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31292249					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:13012327 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18339	CpG island 18339	within coordinates
Lig1	ligase I, DNA, ATP-dependent	within coordinates
Rr400108	regulatory region 400108	240 bp upstream
Rr642459	regulatory region 642459	268 bp distal
Rr642460	regulatory region 642460	within coordinates
Rr642461	regulatory region 642461	25 bp proximal
Rr642462	regulatory region 642462	272 bp proximal
Rr642463	regulatory region 642463	426 bp proximal
Rr642464	regulatory region 642464	875 bp proximal
Tssr64537	transcription start site region 64537	1187 bp downstream
Tssr64538	transcription start site region 64538	1131 bp downstream
Tssr64539	transcription start site region 64539	143 bp upstream
Tssr64540	transcription start site region 64540	377 bp upstream
Tssr64541	transcription start site region 64541	475 bp upstream
Tssr70659	transcription start site region 70659	260 bp downstream
Zswim9	zinc finger SWIM-type containing 9	within coordinates