rs31292397 SNP Detail

Summary

• ID
  rs31292397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138194149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGATAGGGC TACAGGGTCT TCCTTAATTT CATTGTCAGC
  ACAATCTTGT ACAATACAGA ATGAAAGGTA CCCTCATTCT CTCTGTATAG AGTAACACTG
  R
  AACTGGGGAA CTTAAGTAAT TTCACTTACT CAAGCTCTCA GAAAAACTAG CATGCCAAGG
  TCTTTGGCCT ATTAACTCCC CTCTCCCAGG AACCTGTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45519516	mCV23934674	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss135953630	ENSMUSSNP664572	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31292397					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138194149 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13875	CpG island 13875	422 bp proximal
Gm32553	predicted gene, 32553	925 bp upstream
Metap1	methionyl aminopeptidase 1	Intron
Rr586147	regulatory region 586147	1000 bp proximal
Tssr31986	transcription start site region 31986	481 bp upstream
Tssr31987	transcription start site region 31987	503 bp upstream
Tssr31988	transcription start site region 31988	1385 bp upstream
Tssr35894	transcription start site region 35894	649 bp downstream
Tssr35895	transcription start site region 35895	984 bp downstream