rs31293123 SNP Detail

Summary

• ID
  rs31293123
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:61552847 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TATCATGTGA GCTATTTTGT GATTGCATTA CCTCACTCAG GATGATGCCC TCCCGGTCCA
  TCCATTTGCC TAGGAATTTC ATAAATTCAT TCTTTTTAAT AGCTGAGTAG TACTCCATTG
  TGTAAATGTA CCACATTTTT ATATCCATTC CTCTATTGAG GGGCATCTGG GTTCTTTCCA
  GCTTCTGGCT ATTATAAATA AGGCTGCTAT AAACATAGTG GAGCATGTGT CTTTCTTACC
  ATTTGGAACA TCTGCTGGAT GTATGCCCAG AAGAGGTATT GCTGGATCCT CCTATAGTAC
  W
  ATGTCCAATT TTCTGAGGAA CAGCCAGACT GATTTCCAGA GTGGTTGTAC AAGCTTGCAA
  TCCCACCAAC AATGGAGGAG TGTTCCTCTT CCTCCACATC CATGCTTGCA TCTACTGTCA
  CCTGAATATT TGATCTTAGC CATTCTGGCT GGTGTGAAAT GGAATCTCAG GTTTGTTTTG
  ATTTGTAATT CCGTGAGGAT TAAGGATGTT GAACATTTTT TCAGGTGCTT CTCAGCCATT
  CGGTATTCCT CAGGTGAGAA TGCATTGTTT AGCTCTGAGC CTCAATTTTT AATGGGGTTA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45518484	mCV23619902	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31293123					SNP	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:61552847 () rs orientation: reverse

Symbol	Name	Function Class
Rr375072	regulatory region 375072	1874 bp downstream