rs31293363 SNP Detail

Summary

• ID
  rs31293363
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87754294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGT CAGATGGGGT TCTGAGGAAG
  R
  GCCTATAATG ACACTATAAT GACAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45017233	mCV25132790	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss144885071	ENSMUSSNP2542986	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss319829839	CHEV_1_89723147	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs31293363					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87754294 () rs orientation: forward

Symbol	Name	Function Class
Rr366949	regulatory region 366949	1745 bp upstream
Rr371669	regulatory region 371669	within coordinates
Rr414853	regulatory region 414853	1594 bp distal
Rr414854	regulatory region 414854	1499 bp distal
Rr414855	regulatory region 414855	486 bp proximal
Rr414856	regulatory region 414856	1120 bp proximal
Rr414857	regulatory region 414857	1366 bp proximal
Sag	S-antigen, retina and pineal gland (arrestin)	Intron
Tssr7901	transcription start site region 7901	1717 bp upstream
Tssr7902	transcription start site region 7902	1995 bp upstream