rs31293489 SNP Detail

Summary

• ID
  rs31293489
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44891102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAACGAGG AATCAAATCC
  AGCGCTCAGT TCTGCAACTG AAAGTTCCAG TTGACCGGAT TGTCCAGAAA ACTGTTTTCA
  CTTCTGCTTG TTTTTAAACA AGTTCTAGTT AGGCAAATCG ATCTCCTTTC ACACAACTTG
  CCTGTTATTA AATTGTTACT ATTGTCCGAT GGACTACAGA GTCAGGGACA ACACTATCAA
  M
  GTTTGAGATT TTTGACTTAT TGTATTTGAA GAGATGACTC ATTTATTTTG ATATGGGCAA
  AATACCTAGT TGTGAAGTTT TGTGTGCCGC AGGTAAACCT CTACTTCCTC ACCATGCCTA
  TCTTTGAAAA GTTATTGCGG TCTAGTGATT GACTGATCGT TTAGATATGA GTCTCTGGTG
  CGTGTGCCCT GACATGTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46017990	mCV27566883	ABI	CRAMUS_MOUSE	f	SNP		C	A						A
ss51480347	NES13971412	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	A	A	A	C	C	A
ss149131956	ENSMUSSNP4480794	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31293489					SNP	A	C	A	A	A	A	A	A	A	A	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51480347	NES13971412	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44891102 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19038	CpG island 19038	335 bp distal
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	within coordinates
Tssr66503	transcription start site region 66503	572 bp downstream
Tssr66504	transcription start site region 66504	564 bp downstream