rs31294351 SNP Detail

Summary

• ID
  rs31294351
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151856196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCATGGTGC CTTCCCTTCC CAGGCCTCTG
  TCGCTTTCTT AAAACCACTC CTCTCGAGTC ACTACCAACC GTATAGAACA GGTGTTCAGA
  ATGCTTCTAG TCAGGTTTTG TTTTtttagt ttggtttggt ttggtttggt ttggtttttc
  R
  agacagggtt tctctgtgta gccctggctg tcctggaact cactttgtag accaggctgg
  cctcgaactc agaaatccgc ctgcctctgc ctcccaagtg ctgggattaa aggtgtgtgc
  caccacgccc agctCGCCAG GTTTGGGTTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45520439	mCV24210667	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss136101111	ENSMUSSNP1049789	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321028241	CHEV_3_151813523	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs31294351					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151856196 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm64753	predicted gene, 64753			1731 bp upstream
Rr587468	regulatory region 587468			131 bp distal
Rr587469	regulatory region 587469			1241 bp proximal
Rr587470	regulatory region 587470			1767 bp proximal