rs31294584 SNP Detail

Summary

• ID
  rs31294584
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9727761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAATTTGC CCTGTTTTCT GTCATTGTTC AGTTACAGGA
  ACATGAATGT CAAAAACAAG TGTTTACCAT GTAAGCTTGA AGAACTCTCA ATGGAGGCTA
  R
  TACTGATTTT AACAGTGTTA GAACAGTGCT TACCATATGT CCAGCATTGC AGTGCTGGTT
  CAAAGAAAAT TTCACTCAGT ATTCAGTGTA GTGTCATGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46508133	mCV24735790	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		A
ss46817371	NES10973609	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	A		A	A	G	A	G	G	G	G	A
ss134087567	ENSMUSSNP4303393	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31294584					SNP	A	A	G	G	G	A	A	G	A	A	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817371	NES10973609	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9727761 () rs orientation: forward

Symbol	Name	Function Class
Gm62614	predicted gene, 62614	within coordinates
Tssr5590	transcription start site region 5590	577 bp upstream
Tssr160530	transcription start site region 160530	608 bp upstream