rs31295127 SNP Detail

Summary

• ID
  rs31295127
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102524457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACAAGTAAAA CCATTAGTCA ATATAGCATC AACAATAGCA ACAAAAGCAA AGCCTGAACT
  GGTATAGAAC CTCAAATACT CCTGACATCC AGTCATAATG TTCACTTTAC ATTAACAGTA
  TCTGTGTTAT AAGACTTAAA AATTTGAAGA GTAGCTCGGT GGATGAGTTT GAAAGAAAGT
  ACATTTAAGT GCCAAGTAAT TTGAGTATCA TCTGCCAAAA AAATTATTGA AAACTTTAAG
  GACTCCAAAG TAACAATTCA CTAAAGGTAA TTAAAATGAA TTCAACAAGT AAGCAAATCC
  S
  TAAATACATT TTGAAAACAA TCACTTCGGT TTTAAATTCA AACACTAGCA AAGCACACTA
  TCAGACGTGT CGTTGGCATC CAAAATATTC ATTGAAATCA AAATGCAACC CCAGCAATAG
  TCATGGGGTA GATTTTGGAA GAAGGTAGGA TTCTACCTCT TCACCAGTGA TTTGTGATCC
  ACTATGACTC TGGCCAAAGT CACCACTTAT ACCCAGTAGG CTTAGAGAAC CGCTTGAGAT
  CAGTGCTGGC TAAATCAGAG GCCAAGGTGT AAGTAGACTA GCCACTGAAC AATACAAAGG
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46508217	mCV23266650	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31295127					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102524457 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22887	CpG island 22887	1226 bp proximal
Gm26992	predicted gene, 26992	within coordinates
Gm55587	predicted gene, 55587	95 bp upstream
Rr693003	regulatory region 693003	436 bp proximal
Rr693004	regulatory region 693004	879 bp proximal
Tsix	X (inactive)-specific transcript, opposite strand	within coordinates
Tssr161724	transcription start site region 161724	1847 bp upstream
Tssr163949	transcription start site region 163949	290 bp upstream
Tssr163950	transcription start site region 163950	206 bp upstream
Tssr163951	transcription start site region 163951	82 bp upstream
Tssr163952	transcription start site region 163952	55 bp upstream
Tssr163953	transcription start site region 163953	32 bp downstream
Tssr163954	transcription start site region 163954	1699 bp downstream
Tssr163955	transcription start site region 163955	1929 bp downstream
Tssr163956	transcription start site region 163956	1981 bp downstream
Xist	inactive X specific transcripts	within coordinates