rs31295259 SNP Detail

Summary

• ID
  rs31295259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17838038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAT CCAAAATATT ATTTTTCTGA
  R
  TCAGACTAGA TTTCCTCTGT GTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45519949	mCV22663373	ABI	CRAMUS_MOUSE	f	SNP	G	G	A				A
ss46817661	NES10865219	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A	A	A		A	A	A	G		A
ss134653758	ENSMUSSNP4415810	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320673698	CHEV_3_17683874	CHEVERUD	SCREENING_POP	f	SNP									A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31295259					SNP	G	G	A	A	G	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817661	NES10865219	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17838038 () rs orientation: forward

Symbol	Name	Function Class
Gm10742	predicted gene 10742	within coordinates
Gm56811	predicted gene, 56811	within coordinates
Gm65999	predicted gene, 65999	within coordinates
Rr573837	regulatory region 573837	124 bp proximal
Rr573838	regulatory region 573838	833 bp proximal
Rr573839	regulatory region 573839	1728 bp proximal
Tssr32672	transcription start site region 32672	1431 bp downstream
Tssr32673	transcription start site region 32673	1652 bp downstream
Tssr32674	transcription start site region 32674	1694 bp downstream
Tssr32675	transcription start site region 32675	1733 bp downstream