rs31296549 SNP Detail

Summary

• ID
  rs31296549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147977257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTGCTTT CTGTCCCTGT
  CGGCGTAGTG GATGTCTAAA CAACGGTATT TGGTCAAGCC CTGATAGATC AATAACGGAA
  AGCCGTTAAC GTGGGCGTAC AGAAACAGTA TTTGGTCAGC CCCTGATAGA TCACTAGCAG
  AATGCAGTTA GTCACACTTA CTTAGTGCAG TTGATATTAA GAGCTGGTAA GGGTTCCTCA
  Y
  GCTTACTTCT CGACTCCCAC ATCAGCTGTA ACAGAGCATT CTCATTTTCC ACATGAAAGC
  CACGGGGTCC GTTTCAGAGC ACAGACCCAA CAGACTCAAC ACCAAAAGAT TAAGTGCCTA
  AGCTGCCTGA CATTGCTTGT TTAGCTTTGC CCACAGGATT TGAATTTGCC CTACACTACT
  GAACATCCTA AAGTAATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47037277	NES10848000	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31296549					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47037277	NES10848000	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147977257 () rs orientation: forward

Symbol	Name	Function Class
Rr587183	regulatory region 587183	335 bp proximal
Rr587184	regulatory region 587184	949 bp proximal