rs31297291 SNP Detail

Summary

• ID
  rs31297291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126189335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTTTT TATTTCGTAT
  ATACGAGCCC TTTGTCTGCA TGTATGTATG TGCACTGCCT GTATGACTGG TGTTCTTCAA
  GGCCAGAGAG AGTGCTGGGT GTTAGCATTT ATCCTCTGCA AGACCAGCAA GTGCTGCTCT
  TGCCATCTCT CCAGCTCTGT TTCTTGTGTT TGTTTATTTT ACAGAATCTT CCTCTATAGT
  Y
  ACAGTGTGGC CTTGAAATCA CAATTCTCCT GCCTCAACCA ACCAAGTGTT TGAGACGACA
  GGAATGCATC ACCACACTTG GCGTACTAGA TTTAAAAAAA AAAAACTATT AAATTTATTT
  TATGTGTATG AGTGTTCTGC CTGTGTGTAT GTGCACCACT TACCAAGTGC CAAGGAGCAG
  AGAAAAGGCG TCAGATACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46018037	mCV22750530	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss145874724	ENSMUSSNP4593531	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31297291					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126189335 () rs orientation: forward

Symbol	Name	Function Class
Apobr	apolipoprotein B receptor	1051 bp downstream
Il27	interleukin 27	within coordinates
Tssr69041	transcription start site region 69041	736 bp downstream
Tssr74771	transcription start site region 74771	987 bp upstream
Tssr74772	transcription start site region 74772	914 bp upstream
Tssr74773	transcription start site region 74773	890 bp upstream
Tssr74774	transcription start site region 74774	859 bp upstream
Tssr74775	transcription start site region 74775	757 bp upstream
Tssr74776	transcription start site region 74776	748 bp upstream
Tssr74777	transcription start site region 74777	699 bp upstream
Tssr74778	transcription start site region 74778	318 bp upstream
Tssr74779	transcription start site region 74779	79 bp upstream
Tssr74780	transcription start site region 74780	90 bp downstream