rs31297571 SNP Detail

Summary

• ID
  rs31297571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191012844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATA AACACTCCCC TGACTTGCTT
  Y
  TGGGCATGGT GCCGCAGCCT GGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45017809	mCV23988310	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss146503625	ENSMUSSNP124412	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31297571					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191012844 () rs orientation: forward

Symbol	Name	Function Class
Gm37168	predicted gene, 37168	within coordinates
Rr426097	regulatory region 426097	77 bp proximal
Rr426098	regulatory region 426098	1864 bp proximal
Tssr373	transcription start site region 373	180 bp downstream
Tssr10760	transcription start site region 10760	767 bp upstream
Tssr10761	transcription start site region 10761	776 bp upstream
Tssr10762	transcription start site region 10762	806 bp upstream
Tssr10763	transcription start site region 10763	820 bp upstream
Tssr10764	transcription start site region 10764	850 bp upstream