rs31297786 SNP Detail

Summary

• ID
  rs31297786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147977820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTCCAA ACAGCACTGC
  AAATACCTAA GAAAGCTTTT CATTCTTCAT TCACTTTAAA AATACATCCA ACTCTGAATC
  TTCTTGAGTA AAATTATTTG CACCCAGTTT TATCATCATG TGAACCTTAA TGTAAGCCCA
  GACTTAAAGG AGGGGGAAGG AGGCAGCTTA TTGAAAACTT CTTCCATTCA CAGTCTTGGC
  Y
  TGGTCAGGGC AAACATCGTA GGTTCCTTCA AGCATTCATT CAGTTACTTA ACAAGTGTTT
  ATTGAAGGTC TGTAATATAT CAGGGTTTGT ATTTAAGGTT TGAAGGTTGA AAATGAGATG
  AATGAGGGAG AGGCATGGTC CTTATCTTGA AAAAGCACAG GGCTGGTGTG GAGGAGATTA
  GTGGTTAACA GATGACTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47037291	NES10848009	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31297786					SNP	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47037291	NES10848009	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147977820 () rs orientation: forward

Symbol	Name	Function Class
Rr375892	regulatory region 375892	1779 bp upstream
Rr587183	regulatory region 587183	within coordinates
Rr587184	regulatory region 587184	386 bp proximal