rs31299032 SNP Detail

Summary

• ID
  rs31299032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43058328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGCTTAT GCCTCTGTCT
  CCGACAGGGC CTCAAGGTCA GATGGAGAGC TACTTCCTAC AGGTGCAGAG AATTGTGAAG
  GCACAGGAGG GTCTGTGCAT CTTCGTGCCC TGCTCCTTCT CCTCCCCTGA GGGAAAATGG
  CTTAACCGTT CCCCACTTTA TGGCTACTGG TTCAAAGGCA TCAGAAAACC ATCACTTTCA
  Y
  TTCCAGTGGC CACAAATAAC AAAGATAAAG TGTTAGAATG GGAAGCCCGA GGGCGCTTCC
  AGCTCTTGGG GGATATCTCT AAAAAGAACT GTTCCTTGCT AATCAAAGAT GTTCAGTGGG
  GAGACTCAAC AAACTATTTC TTCCGGATGG AGAGAGGATT TGAGAGATTC AGTTTCAAGG
  AGGAGTTCAG GCTACAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46018433	mCV22794621	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss149071754	ENSMUSSNP3050673	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31299032					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43058328 () rs orientation: forward

Symbol	Name	Function Class
Rr645953	regulatory region 645953	690 bp distal
Rr645954	regulatory region 645954	330 bp distal
Siglecg	sialic acid binding Ig-like lectin G	within coordinates
Tssr65984	transcription start site region 65984	693 bp downstream
Tssr65985	transcription start site region 65985	684 bp downstream
Tssr65986	transcription start site region 65986	648 bp downstream
Tssr65987	transcription start site region 65987	631 bp downstream
Tssr65988	transcription start site region 65988	619 bp downstream
Tssr65989	transcription start site region 65989	386 bp downstream
Tssr65990	transcription start site region 65990	365 bp downstream
Tssr65991	transcription start site region 65991	348 bp upstream
Tssr65992	transcription start site region 65992	359 bp upstream
Tssr65993	transcription start site region 65993	392 bp upstream
Tssr65994	transcription start site region 65994	505 bp upstream