rs31299129 SNP Detail

Summary

• ID
  rs31299129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11172228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATTGCTG GAAGAAAAAA
  GTATACTAAT GAAATAACTT GTCAGAATTC TCTTAAAAAA CAACTATATT TGACTACTCT
  GCAATCCAAT TAAAAATCCA AATTTTGTAT AAATAAATAA ATAAATATTA TTTGTTTTTA
  TTTTCTGGTG ATTCCATTGT TAATCTAGAA GTAGGTGAAA GACAAGTCAC CTAGTTGTTA
  Y
  ACCTAGACCA ACTGTCACAT GCTAAAACTT GCACAGATAT TCTGGAACAC TCAGAGAGAG
  ACCATGTCTA TTATTTATCC TGAGCATCTT TAGCAGAGAT AAAAATCCAA CACTGTCTTC
  ATATAAAGCT AAAGTGCTTA AGAAATGATT TTAAAAAGTA ATTAATTTTT AATTTTAGGC
  AGTTTCATTT ATATGTATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45017696	mCV25122749	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		T
ss50597176	NES13640058	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		T	T	T	T	T	T	T	T	T
ss146048772	ENSMUSSNP7078754	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31299129					SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50597176	NES13640058	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11172228 () rs orientation: forward

Symbol	Name	Function Class
4930526L06Rik	RIKEN cDNA 4930526L06 gene	1953 bp upstream
Ms4a13	membrane-spanning 4-domains, subfamily A, member 13	within coordinates
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr158299	transcription start site region 158299	1820 bp downstream
Tssr158300	transcription start site region 158300	1836 bp downstream