rs31301927 SNP Detail

Summary

• ID
  rs31301927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51261402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAA ATGGCTCCTC ACTGGTCACA
  Y
  CTCGAACCTC CCCACCCAGC TGCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45520147	mCV24462592	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss135172839	ENSMUSSNP6781385	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320762380	CHEV_3_51157903	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31301927					SNP	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51261402 () rs orientation: forward

Symbol	Name	Function Class
Rr576282	regulatory region 576282	11 bp distal
Rr576283	regulatory region 576283	407 bp distal
Rr576284	regulatory region 576284	231 bp proximal
Rr576285	regulatory region 576285	1283 bp proximal