rs31303223 SNP Detail

Summary

• ID
  rs31303223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80191031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATGTGTA TCTTGTGCAT
  TTTGGGGAAT TTTTAGTAGA CAATGTCATG ATATTCCATC TTCAAAGGGT CCAGTGTGTG
  ATCTTATCAT TAGCTAAAAG TCTGCAAATA TTGGAAACAT TGCTCATACT CTTTAGTAAT
  CAATAGGCAA ATAGAATTTT GTTGTCATCA GTCTTGAACA ATCTCTTGAT GTCTGTTGTG
  Y
  CATGTTTCTT AGAGCACTGA CAAATTTGTC ACTTCTGTTG TAACTGAGAT ATGAAATCAT
  CTCCTTTGAT TACTTTTCAG GTTCTTCCAT GATATGTGTG GGTTAAGCAT CCGTAGAAAT
  GCACACACAT TAATTACTGT AGGTATGGCA TGAGTTCTCC CCATTGAGCT ATTCCTCATT
  GATCTCATAG TCACAGAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47038243	NES10753742	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31303223					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47038243	NES10753742	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80191031 () rs orientation: forward

Symbol	Name	Function Class
Gm37971	predicted gene, 37971	1399 bp downstream