rs31304059 SNP Detail

Summary

• ID
  rs31304059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80191550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACTTTTC CATCTCAATG
  CAATGCCTTA AGTGTCGTTT TCCAGAAACC AATAGCTCCT TGCAACAGTT TTGGGGCTTC
  AGATTGAAAT TCCCCTTTTA CTGGAGCAGA GTTTGCAAGT GGCTCCTGGA AGAACTTCAG
  AATGTCAGGA CCAGACAATT AAACAACATT CAGAGTGGAA CTGTGCACTC AGTCTGTCGG
  Y
  GTGACTTAGT TCTCAAGGGA AAGTAACTTA CTGCAGTGAA AAGGACATGC ATTTTTGATT
  CTTTATCCAT TATTTTCCCT CAGCACTGTC ACCAGGACAA ATCTAATTAG GTCTTGATGT
  GGGGTTCTGG CCCGGTAGAT GGACTGGTTT ATTTTTTACT AGCCATAAAT ATTCTGAGTA
  CATATGAAGA ATGATTATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47038251	NES10753746	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31304059					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47038251	NES10753746	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80191550 () rs orientation: forward

Symbol	Name	Function Class
Gm37971	predicted gene, 37971	880 bp downstream