rs31304338 SNP Detail

Summary

• ID
  rs31304338
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:159442720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAACCAGGGG TGTGCTCCAG AGAAGAAGCC AAGTAATTAG
  CATGGCAGAA GGAGACTGGT GGGTATCCTT TCTGGGGAGC TGCTTTAGGG CTTCCTACCT
  K
  ACTGAGGCCC CGGAACCGCA GGGCTCCCAG GAAAGGGAAG CCTCGGGTCA AAAGCACCAG
  CACAGGAGGA TTCAGTCTGC CAGGCACTTG AGGCTTTCC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49724345	NES13051419	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	T	G	G	T	T	G	T	T	G	G
ss145869417	ENSMUSSNP6018688	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31304338					SNP	T	T	T	G	T	T	G	G	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49724345	NES13051419	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:159442720 () rs orientation: forward

Symbol	Name	Function Class
Gm10530	predicted gene 10530	within coordinates
Rr421549	regulatory region 421549	391 bp distal
Rr421550	regulatory region 421550	within coordinates
Tnr	tenascin R	Intron