rs31304339 SNP Detail

Summary

• ID
  rs31304339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:159442486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCATAAAC ATCCGCGCCA
  TTGTTCCCAT CTTGAGACAC TCACAATCTA GTTAGGGATG GTGACAGCTG AGCCAGAGCT
  GTGCAGCGAG GCAGAGTACG ATGCGTGTCA CGAAGGAGTT ACAACAGCTC AGCAGCGAGA
  AGGAAAATGG AATTCTGATT GGTGGGAGTG CCATGGACCA AGCTTTGTGG AGGAGAAAAC
  Y
  GAAGAGAAGG CTGGAGTCTT GCCTGCAGGT TGAAGCCGCT GGAAGAGGGA TGAGGAGAGC
  GAAGAAGGTT CCAGCCATGT GCAGTGAATG CAGAGGGGAG GGTGCATCAA GAGACTGCCC
  TGGGAAAGGC CGGGAACCAG GGGTGTGCTC CAGAGAAGAA GCCAAGTAAT TAGCATGGCA
  GAAGGAGACT GGTGGGTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49724346	NES13051416	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31304339					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49724346	NES13051416	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:159442486 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm10530	predicted gene 10530			within coordinates
Rr421549	regulatory region 421549			157 bp distal
Rr421550	regulatory region 421550			within coordinates
Tnr	tenascin R			Intron
				mRNA-UTR