rs31305562 SNP Detail

Summary

• ID
  rs31305562
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:117161943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTT GGGAGAAAAT GTTAAGGTTA
  K
  AGTGTTTGAG AGAATCTGAT GAGAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39276043	mCV25043671	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss146924583	ENSMUSSNP5412320	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss324842591	CHEV_14_117323753	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31305562					SNP	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:117161943 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6842	CpG island 6842	638 bp proximal
Gpc6	glypican 6	784 bp upstream
Rr497535	regulatory region 497535	409 bp proximal
Rr497536	regulatory region 497536	1416 bp proximal
Rr497537	regulatory region 497537	1607 bp proximal
Tssr127141	transcription start site region 127141	674 bp upstream
Tssr127142	transcription start site region 127142	728 bp upstream
Tssr127143	transcription start site region 127143	760 bp upstream
Tssr127144	transcription start site region 127144	848 bp upstream
Tssr127145	transcription start site region 127145	974 bp upstream
Tssr127146	transcription start site region 127146	985 bp upstream
Tssr127147	transcription start site region 127147	1014 bp upstream
Tssr127148	transcription start site region 127148	1027 bp upstream
Tssr127149	transcription start site region 127149	1241 bp upstream
Tssr127150	transcription start site region 127150	1272 bp upstream