rs31306075 SNP Detail

Summary

• ID
  rs31306075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:159441022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACATATGT GTGGAACACT
  GTGGAGATGA GAGGAGCCAC TTGCCATACG CATGGGAGAG GGCACAGCCC CAATGCAAGG
  CTCAGTCCTC GGTTCTGAGG TAAAGTCAGA AAACGAAGAT GTCTGCCCTG GTAAAATTCA
  TGGCAGAGTG GTGGGGGAAT GGCCTTCACA CAAACAAATA GCACAATAAC ATCATTATGT
  Y
  AGATAATTCC AAAATAGTGT TGAATGCTGA GAAGCAAACA GCAGACCGTG TCATTAGGAG
  AGATACCAGG TGGTGGGCTG GGTGTCCTTT AAGCAGCAAG AGAAGAAAAG ACTTCTATGG
  AGAGCATTAT TGAGTTGAGG CTTGGCTATG GAGGAGGGTA CTCTGGGAAG GAGTTTGGGA
  CAGGGGATAC TGCAATTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49724362	NES13051390	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31306075					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49724362	NES13051390	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:159441022 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm10530	predicted gene 10530			1297 bp upstream
Rr421549	regulatory region 421549			1207 bp proximal
Rr421550	regulatory region 421550			1308 bp proximal
Tnr	tenascin R			Intron
				mRNA-UTR