rs31306079 SNP Detail

Summary

• ID
  rs31306079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:159440713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAAGTTT AAAACTCCCC
  AGGGTTCTGT TGACTGCAGT TTGAGAGGCT CTACTTGACT TCTTCCTGCA TTTCTCTATT
  TGTTTTTTTA TATTAATCCT TAATCATCTT AACACATAAT AACAGGGGAA AGTCATAATA
  TTTTACCAGT TTACGAAAAA TGAAGAGTCA CATCTTCCAG GTGAGTGTGG GGTGAGGTGT
  R
  ACAGTGCTCA CGGACTATAG GGGTGAGTGT TAGCAAATGC AAGTAGAGAC AATTCTCTGC
  AGGTACACAC AGAGTAATCA AGGTAGCTGG GCAGACAGCT GTGTGCCACC ACATATGTGT
  GGAACACTGT GGAGATGAGA GGAGCCACTT GCCATACGCA TGGGAGAGGG CACAGCCCCA
  ATGCAAGGCT CAGTCCTCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49724366	NES13051385	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31306079					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49724366	NES13051385	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:159440713 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm10530	predicted gene 10530			1606 bp upstream
Rr421549	regulatory region 421549			1516 bp proximal
Rr421550	regulatory region 421550			1617 bp proximal
Tnr	tenascin R			Intron
				mRNA-UTR