rs31306083 SNP Detail

Summary

• ID
  rs31306083
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:159440535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAGCTTT CTTAGTTTGT
  CACATAATCT TAGCTTCCTT GTGGCTAAAG TTGTGGAGCA ATAATACAGT ATAGGCATTA
  CAGTCACTGT GAGTACTTAG CTATGGTGTG GTCAACTTGA TAAAGCAATG TACACTTTTT
  TGTTAACTAC TTTTAAAAGA GTGATCTCAA AATGAAAGCA TAAAGTTTAA AACTCCCCAG
  S
  GTTCTGTTGA CTGCAGTTTG AGAGGCTCTA CTTGACTTCT TCCTGCATTT CTCTATTTGT
  TTTTTTATAT TAATCCTTAA TCATCTTAAC ACATAATAAC AGGGGAAAGT CATAATATTT
  TACCAGTTTA CGAAAAATGA AGAGTCACAT CTTCCAGGTG AGTGTGGGGT GAGGTGTGAC
  AGTGCTCACG GACTATAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49724370	NES13051381	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31306083					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49724370	NES13051381	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:159440535 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm10530	predicted gene 10530			1784 bp upstream
Rr421549	regulatory region 421549			1694 bp proximal
Rr421550	regulatory region 421550			1795 bp proximal
Tnr	tenascin R			Intron
				mRNA-UTR