rs31306480 SNP Detail

Summary

• ID
  rs31306480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27250704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGC TCCCCAATGT AAAGCTAATT
  R
  GTTAATAAAA GGCTAGAGCC TGCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46019122	mCV22847362	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss148624757	ENSMUSSNP1057288	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A	A
ss322124284	CHEV_7_28336298	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31306480					SNP	G	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27250704 () rs orientation: forward

Symbol	Name	Function Class
2310022A10Rik	RIKEN cDNA 2310022A10 gene	1954 bp upstream
Cpgi18668	CpG island 18668	1523 bp proximal
Pld3	phospholipase D family member 3	within coordinates
Rr167329	regulatory region 167329	896 bp proximal
Tssr65296	transcription start site region 65296	1965 bp upstream
Tssr71425	transcription start site region 71425	1735 bp downstream
Tssr71426	transcription start site region 71426	1825 bp downstream
Tssr71427	transcription start site region 71427	1859 bp downstream