rs31307189 SNP Detail

Summary

• ID
  rs31307189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8930925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG GGGCAGTTGT GTGGTGAAAT
  R
  AAGGCATAGA TCGCCCGCCA CCACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45018426	mCV24151335	ABI	CRAMUS_MOUSE	f	SNP		A	G					A
ss50609126	NES13644055	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G		G	A	A	G	G	A	A	G	G
ss146030823	ENSMUSSNP1353634	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31307189					SNP	A	A	G	A	G	A	G	A	G	A	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50609126	NES13644055	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8930925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10588	CpG island 10588	within coordinates
Gm59132	predicted gene, 59132	within coordinates
Mta2	metastasis-associated gene family, member 2	1266 bp downstream
Rr359578	regulatory region 359578	1925 bp distal
Rr363780	regulatory region 363780	within coordinates
Rr405849	regulatory region 405849	5 bp upstream
Tssr154900	transcription start site region 154900	1476 bp downstream
Tssr154901	transcription start site region 154901	265 bp upstream
Tssr154902	transcription start site region 154902	300 bp upstream
Tssr154903	transcription start site region 154903	325 bp upstream
Tssr154904	transcription start site region 154904	416 bp upstream
Tut1	terminal uridylyl transferase 1, U6 snRNA-specific	286 bp upstream