rs31307191 SNP Detail

Summary

• ID
  rs31307191
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156665225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAAAGGCT GGGCCAGAGG ACATGATGAT
  TCATCTTCAG TTCACAGTCA ATGGGGAGTC AACGATCCTT TGGGTTTTCT TTTTTTCTTT
  TAATTCAGGG TTGTGTTTGT TTTTAAATGA TACCAATCAA CTaacaacaa caacaacaac
  M
  acCACCACCT TATTTTGACA ATTGACACTG AATtgactag ttttaactca tcttgacaca
  agctagagga ggaagcctca actgaaaatg cctccatgag atccagctga gggcaagcct
  ggaggaaatt ttcttagtga ttgatgtgaa                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45018428	mCV24596597	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A	C
ss145806668	ENSMUSSNP6060045	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320072858	CHEV_1_158767786	CHEVERUD	SCREENING_POP	f	SNP						C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31307191					SNP	C	C	C	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156665225 () rs orientation: forward

Symbol	Name	Function Class
Angptl1	angiopoietin-like 1	1270 bp upstream
Gm28693	predicted gene 28693	1716 bp upstream
Gm68672	predicted gene, 68672	within coordinates
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	within coordinates
Tssr9579	transcription start site region 9579	1248 bp upstream
Tssr9580	transcription start site region 9580	1260 bp upstream