rs31307380 SNP Detail

Summary

• ID
  rs31307380
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:112156531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTGTCTT GAAGACAGGG
  CTCCGTGTAT CCCTGTCTGA GCCTAGGCTC CCTATGTAGC TAAAGATGAC TTTGAACCCC
  TGGTCCTCTT GCGTCCACCT CCCAAGTACT GGGGTTACAA CAGTGTGCCA CCATACCCAG
  CTCAAGACGG CAACTGTTAA CAGAATACAT TGCAGAAACT CTATGTTCAC GTGCAGGTGT
  S
  AACTTTGACA TCCAGGATTG CTTTCACCTA CATTTCTAAC TCGATAGCTG TCGATGGACA
  AACATTATTC AAACTGTCTC ATTCTTAGAC TGATGATACT CATTTTCTAC TGCCGGGCAG
  TGCAGTCTTA GGAGCTTAAA ATGTAAAACA TTTAAGAGTA CCTGGGTATC ACATTGGAAC
  CCAGACAAAA CCTGAACACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47538313	NES11191940	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31307380					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47538313	NES11191940	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:112156531 () rs orientation: forward

Symbol	Name	Function Class
Rr382647	regulatory region 382647	724 bp upstream
Tssr79464	transcription start site region 79464	1368 bp upstream
Tssr79465	transcription start site region 79465	1486 bp upstream