rs31308226 SNP Detail

Summary

• ID
  rs31308226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:112157041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAACTAA GTCTTCAGAT
  ATCCGGCCAC AGGATTATCC TTGCTTCCAA CAGCAATGGG CGTAGGCACT GAATAGTTAG
  AGAACTATTT CTAAGTTATT TTCTAACAGG TTTACTTTCC ACCACTACGT TATCCATGCC
  AGCATACCCA ATAGCATCCA TGTGTTCCCT TGGCTGTTTG CTGTTGTACG AACATATAAA
  Y
  TTACAAACAT ACCACACCTT ATAAACTACC CCATCAACTC TTTCTCTGAT AGGCTTTCAT
  GACATGGCCT AGGCTAGCTT CAAATTCACT ATGTAGCCTA GGTTGGCTTT GAATCCAGAG
  CCTCACACAA GTTAGGTATG TATTACCTCC GGGGTGACTG CTATGGCTAA TCAATTTTTA
  AATCTCATAT ATAAATGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47538319	NES11191921	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31308226					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47538319	NES11191921	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:112157041 () rs orientation: forward

Symbol	Name	Function Class
Rr382647	regulatory region 382647	214 bp upstream
Tssr79464	transcription start site region 79464	858 bp upstream
Tssr79465	transcription start site region 79465	976 bp upstream