rs31308229 SNP Detail

Summary

• ID
  rs31308229
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:112157335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCTAGGT TGGCTTTGAA
  TCCAGAGCCT CACACAAGTT AGGTATGTAT TACCTCCGGG GTGACTGCTA TGGCTAATCA
  ATTTTTAAAT CTCATATATA AATGTGTTGT GTCACCATTC ATGGACCAAT ATTGATACCT
  AAGGCCATTT TTTATTCAGA CAACATTTGG TTGTCACGCC TCTTCAGATT TCTTGATGTA
  R
  CCATTTTGCA GCATTCTCTT GATTTTACTT ACTTTGTTTT GCTTTGGTTT CTTGAGACAC
  GGTCTTGCTA TGTATCTCAG GCTGCCCTCG AACCCACAAT CCCTCTGCCT CATCTCCCAG
  AAAGCAAAAC CGGAGTCCAT GGTTTTATAG ACCTGACAGT TTTACTCAAG GATTTTACAG
  GATGTCTCTT ACTTGGGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47538322	NES11191861	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31308229					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47538322	NES11191861	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:112157335 () rs orientation: forward

Symbol	Name	Function Class
Rr382647	regulatory region 382647	within coordinates
Tssr79464	transcription start site region 79464	564 bp upstream
Tssr79465	transcription start site region 79465	682 bp upstream