rs31309273 SNP Detail

Summary

• ID
  rs31309273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190734074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCAGCTGG TCCAGGTACA CGCCACCATA AGTTAACTTG
  CAGAAGGTTC ACTTCTTCTG CTCTACTTCA ACCATCTTGG TGGTTGCTTG AAAAAGGAAG
  Y
  GTTGGCTGCA TCTGCCTAAT ACTACCTTTT AACTGAGCCC TCTAAAATCA CAAACAAGTT
  ACATACATCT GTGCTGCAAT GGAATCAACA CCTCCATTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
ss45018588	mCV25261070	ABI	CRAMUS_MOUSE	f	SNP	T	T					T		C
ss51424208	NES14445408	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T		C	C	T	C			C
ss320194537	CHEV_1_192825756	CHEVERUD	SCREENING_POP	f	SNP												C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
rs31309273					SNP	T	T	T	T	T	T	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51424208	NES14445408	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190734074 () rs orientation: forward

Symbol	Name	Function Class
Gm8407	predicted gene 8407	26 bp upstream
Gm37095	predicted gene, 37095	1079 bp upstream
Gm70616	predicted gene, 70616	1621 bp upstream
Rr426021	regulatory region 426021	523 bp proximal