rs31309347 SNP Detail

Summary

• ID
  rs31309347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70313217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCCCGAC TCTCCAGCGG
  GGGCCGCGGG ATTCACCGCG CCCACGCGGC CACTGAGGAG GGAATCCTCC CCCGCCAACC
  CGGTGTGATT CGGGGTCGCG CCTCCGTGCT CCCTCCCTCT CCTCCCCCTC GCTCTCAGCC
  AGGCTGCGCG CTTCAGGAGC AGGCCTCGGG GAACACATCA CCCACCCCCG GGATCCGCTG
  Y
  CGAGGTGACA GCACCCTGGG TCGGCACAGG GGGCCGCCCT TGACTGCAAG GCACCCTCAG
  GCAGCAATGA GGACAACCCT GCGGGAGACA GAGAGTAGAG ACTGGAGGAG ACCGCCTTGG
  TGGCTTAGAA TCTGTGGGTT TCACATCTTC CCGCAGTAAC TCAGCCGCAA GCCCTTCGCC
  GGCTGCAGTA GATAGCGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39276191	mCV25164244	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss139680485	ENSMUSSNP4950601	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31309347					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70313217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6680	CpG island 6680	within coordinates
Cpgi6681	CpG island 6681	844 bp proximal
Egr3	early growth response 3	1549 bp upstream
Gm63137	predicted gene, 63137	42 bp downstream
Rr404186	regulatory region 404186	972 bp upstream
Rr494833	regulatory region 494833	650 bp distal
Rr494834	regulatory region 494834	910 bp distal
Rr494835	regulatory region 494835	56 bp distal
Rr494836	regulatory region 494836	945 bp proximal
Tssr126385	transcription start site region 126385	601 bp downstream
Tssr126386	transcription start site region 126386	569 bp downstream
Tssr126387	transcription start site region 126387	1139 bp upstream
Tssr126388	transcription start site region 126388	1158 bp upstream
Tssr126389	transcription start site region 126389	1400 bp upstream
Tssr126390	transcription start site region 126390	1438 bp upstream
Tssr126391	transcription start site region 126391	1538 bp upstream
Tssr126392	transcription start site region 126392	1607 bp upstream