rs31309708 SNP Detail

Summary

• ID
  rs31309708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70702912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TTACCTCACT CTGCCTGGAC TCTTACAGAC TATGCCAAGG AACACCTTGC
  Y
  CAGCTGCAGG AGAAGGCTGA GCAGATCGCT GGCCGCATGC TCCGCTTCTC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39275800	mCV24332332	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss51530317	NES14627560	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	T	C	C	C	T	C
ss139684664	ENSMUSSNP3845487	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31309708					SNP	T	T	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51530317	NES14627560	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70702912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	1394 bp proximal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Rr290302	regulatory region 290302	1689 bp proximal
Tssr4470	transcription start site region 4470	1138 bp upstream
Tssr126423	transcription start site region 126423	983 bp upstream
Tssr126424	transcription start site region 126424	1067 bp upstream
Tssr126425	transcription start site region 126425	1094 bp upstream
Tssr126426	transcription start site region 126426	1251 bp upstream
Tssr126427	transcription start site region 126427	1348 bp upstream
Tssr126428	transcription start site region 126428	1381 bp upstream