rs31310123 SNP Detail

Summary

• ID
  rs31310123
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:159271038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAATAAC AGAACACAGC
  ATGTCCCTTT GTCTGCAAAT GAGGACTCTT AGATACTGCT TGTTTGTCTG TCAGCTTTCT
  GGAAGACAAG CTTCCAGTCA ATCTCCCCTT TGGAGAAAAT CAAGGAAATC CCAACATATC
  AACCAGAATA CACAGGGCGT TACTAATAGT TTTGAAGATC CAAGTTCTCC CATGTGGAGG
  W
  TTTATTTAGT AACTTCAGCC TTAGCTCTAA GGCTCATAAT GTCAACAACC CCAAGTTGAA
  AGTCATTCAG ATACACAGGA AAAATGCACA CACCCTTTTA AATTTGGGTA TGATGACTCA
  CACCTATAAT CCTAGCACTT GGTGAGTTTG AGGTCAGTCT AGATTACATT GGGGGACCCT
  GTCTTAAAAA ACAAACCAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49725329	NES13055687	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31310123					SNP	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49725329	NES13055687	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:159271038 () rs orientation: forward

Symbol	Name	Function Class
Rr421534	regulatory region 421534	694 bp proximal