rs31310217 SNP Detail

Summary

• ID
  rs31310217
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:60162574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTAAACCA TTGTGTTTAT
  ATATTTTACC TTTCAAGAAT CCTAGCTGTA TACAGTTTAG AACAGTAATT TTCAAATAGG
  GTATATATAT ATATATATAT GAACATAATA TATTTATTCT TAAGCAAGTA TATATCTTAT
  ATAAAACTTA AATATATAGA ACTCATATAT ACATATATGT ATATATTTAA GAGAGTTATA
  R
  ATCTTTATTT GTTTATTTAT TTATCTATTT ATTTTTACAA ATTAGAAGTT GGGAAATCCA
  ATGACATAGA ACACTGTTCC AGGTGTTAAC TGTTTTTTTT TTTTTTTGAT GATTCTGACA
  TTCCAGTTGT GTATTTAAAA GGAAGTACTG AAGGGGTTAA TGCAAAATTT TTCTGTTCCT
  CAAGTATTCA GAGAGTTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss46510459	mCV24933800	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss134186507	ENSMUSSNP973879	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A
ss325891236	CHEV_X_58372143	CHEVERUD	SCREENING_POP	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs31310217					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:60162574 () rs orientation: forward

Symbol	Name	Function Class
Cdr1os	cerebellar degeneration related antigen 1, opposite strand	within coordinates
Gm53013	predicted gene, 53013	within coordinates
Rr691611	regulatory region 691611	1344 bp distal
Rr691612	regulatory region 691612	606 bp proximal
Tssr161069	transcription start site region 161069	1327 bp upstream
Tssr161070	transcription start site region 161070	1520 bp upstream
Tssr161071	transcription start site region 161071	1535 bp upstream
Tssr161072	transcription start site region 161072	1854 bp upstream